Publications

Edwards, J; Saran, U; Bonnette, J; MacQueen, A; Yin, J; Nguyen, T; Schmutz, J; Grimwood, J; Pennacchio, L; Daum, C; Glavina del Rio, T; Fritschi, F; Lowry, D; Juenger, T. Genetic determinants of switchgrass root-associated microbiota in field sites spanning its natural range. Current Biology (2023)

Khasanova, A.; Edwards, J.; Bonnette, J.; Singer, E.; Haque, T.; Juenger, T. Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits Proceedings of the Royal Society B. (2023) 

Liu, X.; Weng, X.; Edwards J.; Wang, L.; Zhang, C.; Qiu, J.; Li, Z. Editorial: Adaptive Evolution of Grasses. Frontiers in Plant Science (2023)

Santos, C.; Edwards, J.; Nguyen, B.; Sundaresan, V. Acquisition of a complex root microbiome reshapes the transcriptomes of rice plants. (2022) New Phytologist

Mueller, U., Juenger, T., Kardish, M., Carlson, A., Burns, K., Edwards, J., Smith, C., Fang, C., Des Marais, D. Artificial Microbiome-Selection to Engineer Microbiomes That Confer Salt-Tolerance to Plants. mSystems (2021)

Santos, C.; Liechty, Z.; Edwards, J.; Nguyen, B.; Huang, B.; Weimer, B.; Sundaresan, V. Drought duration determines the recovery dynamics of rice root microbiomes. (2021) Nature Plants

Murphy, K; Edwards, J; Louie, K; Bowen, B; Sundaresan, V; Northern, T; Zerbe, P. Bioactive Diterpenoids Impact the Composition of the Root-Associated Microbiome in Maize (Zea mays) Scientific Reports 11, 1 (2021)

Liechty, Z., Santos, C., Edwards, J., Nguyen, B., Mikhai, D.l, Eason, S., Phillips, G., and Sundaresan, V. Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters. mSystems 5 (1) (2020)

Edwards, J., Santos-Medellin, Liechty, Nguyen, B., Kilmer, J., Liechty, Z., Veliz, E., Ni, J., Phillips, G., Sundaresan V. Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota. Genome Biology 20, 221 (2019)

Edwards, J., Santos-Medellín, C., Sundaresan V. “Extraction and 16S rRNA Sequence Analysis of Microbiomes Associated with Rice Roots.” Bio-protocol (2018)

Edwards, J, Santos-Medellín, C., Liechty, Z., Nguyen, B., Lurie, E, Eason, S., Phillips, G., Sundaresan, V. “Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice.” PLoS Biology 16.2 (2018)

Santos-Medellín, C., Edwards, J., Liechty, Z., Nguyen, B., and Sundaresan, V. “Drought stress results in a compartment-specific restructuring of the rice root-associated microbiomes.” mBio 8.4 (2017)

Battenberg, K., Wren, J. A., Hillman, J., Edwards, J., Huang, L., & Berry, A. M. The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil. Applied and Environmental Microbiology (2017)

Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N.K., Bhatnagar, S., Eisen, J.A., and Sundaresan, V. (2015). Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences